Name: 集団遺伝学入門 (2010) (Introduction to Population Genetics (2010))
Uploaded: 2021-01-14T05:35:27.000Z
Duration: 1 h 28 min 24 s
Description: VoiceTubeの動画で発音を聞きながら英語表現を覚えよう！学べる英語：

GOOD MORNING, EVERYONE. GREETINGS OF THOSE JOINING US THREW THE LIVE

FEED. THIS IS WEEK SEVEN OF THE COURSE IT'S MY PLEASURE

TO INTRODUCE TO YOU DR. LYNN JORDE FROM THE UTAH SCHOOL OF MEDICINE.

HER RESEARCH INTERESTS ARE IN THE AREA OF GENE MAP AND EVOLUTIONARY GENETIC.

HIS GROUP IS ANALYZING VARIATIONS IN GENE IN THE PATHWAY WITH THE GOAL OF HOPING TO

BETTER UNDERSTAND THE ROLE OF THESE GENES IN TO HYPERTENSION AND HIS WORK ALSO FOCUSES

ON A NUMBER OF OTHER DISORDERS SUCH AS THE GENETICS OF JUVENILE IDIOPATHIC ARTHRITIS

AND INFLAMMATORY BOWEL DISEASE. NUCLEAR DNA FOCUSING ON MOBILE ELEMENTS, THE

GOAL OF THIS WORK IS TO UNDERSTAND BETTER THE GEOGRAPHICAL ORIGIN AND MIGRATION OF MAN

AND HOW THESE DATA MIGHT BE USED TO DETERMINE THE RELEVANCE OF RACE, RACE IN QUOTATION MARKS

IN BIOMEDICAL SETTINGS WHICH THE DOCTOR WILL TALK TO YOU ABOUT THIS MORNING.

FINALLY, LYNN IS ONE OF THE MOST WONDERFUL LECTURERS THAT I KNOW I WAS VERY SURE THAT

YOU'RE GOING TO ENJOY TODAY AS LECTURE AND LEARN A LOT FROM HIM THIS MORNING.

TODAY'S LECTURE AGAIN IS INTENDED TO PROVIDE YOU AN OVERVIEW OF THE FIELD OF POPULATION

GENETICS MY PLEASURE TO INTRODUCE TO YOU. [APPLAUSE]

>> THANK YOU VERY MUCH. IT'S A PLEASURE TO BE BACK HERE AGAIN.

THIS MORNING I WOULD LIKE TO INTRODUCE YOU TO THE TWO OF THE FIELD OF POPULATION GENETICS.

MY TALK WILL BE DIVIDED IN THREE PARTS, AT THAT TIME EARNS -- PATTERNS OF HUMAN GENETICS

BOTH AMONG HUMAN AND AMONG INDIVIDUALS WHICH WE CAN NOW LOOK AT WITH SOME PRECISION.

WE'LL TALK ABOUT THE IMPLICATIONS OF THIS WORK FOR CONCEPTS OF RACE, SOMETHING THAT

IS CONTROVERSIAL AND SOMETHING THAT I THINK IS ILLUMINATED BY OUR GENETIC STUDIES.

THEN FINALLY IN THE THIRD PART OF THE TALK WE'LL DISCUSS HOW POPULATION GENETICS, EVOLUTIONARY

GENETICS INFORMS OUR UNDERSTANDING OF THINGS LIKE LINKAGE TO DISEQUILIBRIUM, THE HAPMAP

AND OUR CONTINUING SEARCH FOR GENES UPPED LYING DISEASE.

WITH MUTATION. THE GENERATOR OF GENETIC VARIATION.

WE ESTIMATE BASED ON PHYLOGENETIC ANALYSIS THAT THE HUMAN MUTATION RATE IS ABOUT 2.5

TIMES TO THE -- PER BASE PER PER GENERATION. WHAT THAT MEANS IS THAT WE TRANSMIT ABOUT

75 OR SO NEW DNA VARIANTS WITH EACH GAMETE. I SHOULD SAY THAT SOME OF THE NEW GENOME ANALYSES

OF FAMILIES ARE SUGGESTING THAT THIS RATE IS OVERESTIMATED AND THAT THE ACTUAL MUTATION

RATE MAY BE ABOUT HALF OF THIS. INTERESTING TO SEE AS THOSE STUDIES COME OUT

WHERE THE MUTATION RATE FINALLY LANDS. BUT WE THINK NOW IT MIGHT BE ROUGHLY HALF

OF THE USUALLY CITED PHYLOGENETIC ESTIMATE. HERE IS A QUOTE FROM LOUIS THAT I LIKE VERY

MUCH. HE SAID THE CAPACITY TO BLUNDER SLIGHTLY IS

THE REAL MARVEL OF DNA, WITHOUT THIS SPECIAL ATTRIBUTE WE WOULD STILL BE ANAEROBIC BACTERIA

AND BE NO NUCLEUS US. THAT IS A LOVELY QUOTE.

REMAINS US OF WHY WE SHOULD BE THANKFUL FOR OUR MUTATIONS.

WELL, ONE OF THE QUESTIONS THAT WE CAN ASK AS WE LOOK AT DNA VARIATION IN INDIVIDUALS

AND POPULATIONS SPECIE IS HOW MUCH AT THE DNA LEVEL DID WE DIFFER?

IF WE LOOK AT ALIGNED DNA BASE DIFFERENCES, IDENTICAL TWINS BEING NATURE'S CLONES HAVE

ZERO DNA SEQUENCE DIFFERENCES. A FAMOUS FIGURE NOW, IS THAT IF WE LOOK AT

ANY TWO UNRELATED HUMANS, FOR ALIGNED DNA BASE DIFFERENCES WE VARY ABOUT ONLY ONE IN

1,000. SEVERAL TIMES MORE THAN THIS IF YOU INCLUDE

COPY NUMBER VARIANTS BUT FOR ALIGNABLE SEQUENCE WE ARE AS HAS BEEN SAID MANY TIMES NOW 99.9%.

IF WE COMPARE OURSELVES IN THE SAME WAY TOURER NEAREST NEIGHBOR, THE CHIMP WE DIFFER ABOUT

1 IN A HUNDRED BASE PAIRS FROM THE CHIMP. IN THE SENSE WE'RE 99% CHIMP.

IF WE COMPARE OURSELVES TO MOUSE, ABOUT ONE IN THREE BASE DIFFERS COMPARES HUMANS AND

MOUSE. THIS WE GO OUT FURTHER WE ARE DIFFERENT FROM

BROCCOLI. BUT WHAT THIS MEANS IS THAT WE HAVE THREE

BILLION DNA BASE PAIRS, THAT MEANS THERE ARE ABOUT THREE MILLION DIFFERENCES BETWEEN EACH

PAIR OF HUMANS. SO A TREMENDOUS RESERVOIR OF GENETIC VARIATION

THAT ACCOUNTS FOR THE DIVERSITY THAT WE SEE. HOW MUCH DO POPULATIONS DIFFER?

THAT IS THE FIRST AREA THAT WE LOOK AT THIS MORNING.

HERE WE SEE A MAP OF THE WORLD WITH THE POPULATION THAT I'LL BE TALKING ABOUT DESIGNATED.

WE'VE BEEN TRYING TO SAMPLE MORE AND MORE EXTENSIVELY ACROSS THE WORLD AND IN COLLABORATION

WITH THE FOUNDATION IN SALT LAKE CITY WHO HAVE COLLECTED MORE THAN 100,000 DNA SAMPLES

FROM ALL OVER THE WORLD. I'M GO STEMMING YOU ABOUT VARIATION IN A THOUSAND

INDIVIDUALS REPRESENTING 40 POPULATIONS. REALLY QUITE DIVERSITY.

HERE ARE SOME OF THE PHOTOGRAPHS OF SOME OF THE TALKS I'LL BE TELLING YOU ABOUT.

TO ASSESS VARIATION THE STANDARD APPROACH IS TO LOOK AT ALLELE FREQUENCIES.

IF WE IMAGE IN THAT WE HAVE THREE SNPS SINGLE NUCLEOTIDE POLYMORPHISMS THAT WE'RE ANALYZING.

WE CAN SEE THAT THERE ARE DIFFERENCES IN THE FREQUENCIES OF THESE THREE SNPS IN POPULATIONS

ONE, TWO AND THREE. WE LOOK AT THOSE DIFFERENCES, WE LOOK AT THAT

VARIATION TO ASSESS PATTERNS OF SIMILARITY AMONG POPULATIONS.

THIS IS ONE OF TWO EQUATIONS THAT I'LL SHOW YOU.

I'M NOT GOING TO TORTURE YOU WITH MATHEMATICS THIS MORNING THIS IS PRETTY SIMPLE.

IT SHOWS HOW WE ESTIMATE A STATISTIC CALLED FST TO ASSESS VARIATION BETWEEN POPULATION.

SO, FST IS THE AMOUNT OF GENETIC VARIATION THAT IS DUE TO POPULATION DIFFERENCES.

AND WE GET IT BY LOOKING AT THE TOTAL HETEROZYGOCITY. TOTAL VARIATION ACROSS OUR SAMPLES, THAT'S

H SUB2. FROM THAT TOTAL WE SUBTRACT THE AVERAGE HETEROZYGOCITY

WITHIN EACH SUBDIVISION. IF FST IS ZERO ALL OF THE VARIATION THAT WE

AB EVERYBODY DAB DAB OBSERVE ARE IN POPULATIONS, THE AVERAGE WITHIN SUBDIVISIONS IS EQUAL TO

THE TOTAL. THERE'S NO DIFFERENCE BETWEEN POPULATION.

THE OTHER HAND IF FST IS ONE, THEN ALL OF THE VARIATION EXISTS BETWEEN POPULATIONS.

ONLY WAY WE CAN GET THIS WOULD BE FOR H TO BE ZERO.

IN OTHER WORDS ALL OF OUR POPULATION OR IN THIS CASE CONTINENTS WOULD CONSIST OF IDENTICAL

CLONE. NO VARIATIONS WITHIN SUBDIVISIONS.

FST OF ONE, MAXIMUM VARIATION BETWEEN SUBDIVISIONS, FST OF ZERO, NONE.

IF WE LOOK AT THIS STATISTIC IN SERIES OF POLYMORPHISMS IN THE SAMPLES, IF WE LOOK AT

STRS, RESTRICTION SITE POLYMORPHISMS AND L1S AND 250K SNP ARRAY WE SEE THAT THE FST VALUE

FOR OUR HUMAN POPULATION IS PRETTY CONSISTENTLY SOMEWHERE BETWEEN 10-15%.

THIS WE SEE IN MANY STUDIES DIFFERENT KINDS OF DNA POLYMORPHISMS, DIFFERENT SETS OF POPULATIONS,

BUT TYPICALLY ROUGHLY 10 TO 15% OF GENETIC VARIATION CAN BE ASCRIBED TO DIFFERENCES BETWEEN

THESE MAJOR POPULATIONS. THAT'S RELATIVELY SMALL AMOUNT.

TELLING US THAT THERE ISN'T THAT MUCH VARIATION BETWEEN HUMAN POPULATIONS OR THESE LARGELY

NEUTRAL DNA VARIANT. WE CAN COMPARE THAT WITH SKIN PIGMENTATION.

, WE SEE THE OPPOSITE PATTERN. 90% OF VARIATION EXISTS BETWEEN POPULATION.

VERY DIFFERENT PATTERN FROM WHAT WE LOOK AT ACTUAL DNA VARIATION.

THESE ARE TRAITS, THIS IS STRONGLY SELECTED IN HUMAN POPULATION FOR DIFFERENT AND DIVERGENT.

IF WE LOOK AT THE THREE HAPMAP POPULATIONS OF THE EUROPEAN DERIVED POPULATIONS, THE TWO

ASIAN POPULATIONS WE JUST LOOK AT THOSE, THAT'S A LIMITED SAMPLE OF HUMAN DIVERSITY.

GIVES US A HIGH FST VALUE ABOUT 15%. IF WE START TO SAMPLE MORE POPULATIONS OF

FST TENDS TO GO DOWN THAT IS LESS VARIATION BETWEEN POPULATIONS AS WE SAMPLE MORE OF THE

WORLD'S DIVERSITY. HERE LOOKING AT 27 POPULATIONS PST HAS GONE

DOWN. THE IMPORTANCE IMPORTANT AS WE SAMPLE MORE

EVENLY ACROSS THE GLOBE THIS LEVEL OF DIFFERENTIATION TENDS TO GO DOWN.

IT'S NOT GOING TO ZERO BECAUSE OF COURSE THERE IS VARIATION AMONG HUMAN POPULATION.

BUT IMPORTANTLY IN THE OVERESTIMATED IF WE SAMPLE SELECTIVELY.

ASK, WHAT PROPORTION OF SNP ARE SHARED AMONG POPULATIONS.

HERE WE'RE LOOKING AT COMMON SNPS FROM THE ENCODE DATABASE WHERE THE MINOR ALLELE FREQUENCY

IS GREATER THAN 5%. ABOUT 80% OF THE MINOR ALLELE ARE SHARED AMONG

字幕リスト動画再生

集団遺伝学入門 (2010) (Introduction to Population Genetics (2010))

pattern

disease

population

race